Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCF_017742755.1/fasta/hub_GCF_017742755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           7044761
Total number of identified SSRs:                 235
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    11


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	82
3	29
4	7
5	53
6	64

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	33	7		1				41
GC	-	-	-	37	4						41
CAG	-	-	1								1
CCG	-	-	2								2
CGA	-	-	3								3
CGC	-	-	2								2
CGG	-	-	4	1		1					6
CGT	-	-	2								2
GCA	-	-			1						1
GCC	-	-	2								2
GCG	-	-	7								7
GGC	-	-	1								1
TCA	-	-	1								1
TCG	-	-	1								1
ACGC	-	1									1
CGCC	-	1									1
GACC	-			1							1
GATT	-	1									1
GCCG	-	2									2
GCCT	-		1								1
AACGA	1										1
ACGCG	2										2
ACGGC	1										1
AGCCA								1			1
ATTCG	1										1
CCACG	1										1
CCCGC	1										1
CCGCG	2										2
CGAGC		1									1
CGCCG	1	1									2
CGCGC	11										11
CGCGT	2										2
CGCTG	2										2
CGGCA	1										1
CGGCG	3										3
GACGT	1										1
GAGGC	1										1
GCCCG	1										1
GCCGC	5										5
GCGCC	2										2
GCGCG	4										4
GCGGC	2	1									3
GCGGT					1						1
GGAAT	1										1
GGCGG	1										1
TGTGC	1										1
AAGCCG		1									1
ACCGCC		1									1
ACGCCA	1										1
AGAAAC	1										1
ATCGCC	1										1
ATGCGG	1										1
CACGAG										1	1
CCCAGT				1							1
CCGAAA	1										1
CCGAAG					1						1
CCGCCA	1										1
CCGCCT					1						1
CCGCTA	1										1
CCGCTC			1								1
CGACGC	1										1
CGAGCG	1										1
CGATAT			1								1
CGCGGT	1										1
CGCGTC	1										1
CGCGTT	1										1
CGGCAC		1									1
CGGCGA	1										1
CGGCGC	3										3
CGGCTG	1										1
CGTCGC			1								1
CTCGCC			1								1
GAACTG	1										1
GACCAA	1										1
GACTGG	1										1
GCATCG	1										1
GCCCAA		1									1
GCCGAA	1				1						2
GCCGAT	2										2
GCGAGC	2										2
GCGATG	1										1
GCGATT		1									1
GCGCCG	1										1
GCGGCT		1									1
GCGGGC	1										1
GCGTTG		1									1
GGCGAC	1										1
GGCTCG	1										1
GTCGAC	1										1
GTCGGC	1										1
GTCGGT					1						1
GTTGCC		1									1
TCACGG	1										1
TCGACC	1										1
TCGATG	1										1
TCGCAA	1										1
TCGCGC	1										1
TCGCTG	1										1
TCGGCA	1										1
TGCCGA	1										1
TGCCGG	1										1
TGCGAC	1										1
TGCGCC	1										1
TGGACG	1										1
TGGCGG				1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	70	11		1				82
ACG/CGT	-	-	6								6
AGC/CTG	-	-	1		1						2
ATC/ATG	-	-	1								1
CCG/CGG	-	-	18	1		1					20
AATC/ATTG	-	1									1
ACCG/CGGT	-			1							1
ACGC/CGTG	-	1									1
AGGC/CCTG	-		1								1
CCCG/CGGG	-	1									1
CCGG/CCGG	-	2									2
AAACG/CGTTT	1										1
AAGCC/CTTGG								1			1
AATCG/ATTCG	1										1
AATGG/ATTCC	1										1
ACAGC/CTGTG	1										1
ACCGC/CGGTG					1						1
ACGCC/CGTGG	1										1
ACGCG/CGCGT	4										4
ACGGC/CCGTG	2										2
ACGTC/ACGTG	1										1
AGCCG/CGGCT		1									1
AGCGC/CGCTG	2										2
AGGCG/CCTCG	1										1
CCCCG/CGGGG	2										2
CCCGG/CCGGG	1										1
CCGCG/CGCGG	30	2									32
AAACAG/CTGTTT	1										1
AAACCG/CGGTTT	1										1
AACGCC/CGTTGG	1	1									2
AACGCG/CGCGTT	1										1
AACGGC/CCGTTG		1									1
AACTGG/AGTTCC	1										1
AAGACC/CTTGGT	1										1
AAGCCC/CTTGGG		1									1
AAGCCG/CGGCTT	1	1			2						4
AATCGC/ATTGCG	1	1									2
ACACCG/CGGTGT					1						1
ACAGCG/CGCTGT	1										1
ACATCG/ATGTCG	1										1
ACCGCC/CGGTGG	1	1		1							3
ACCGCG/CGCGGT	1										1
ACCGCT/AGCGGT	1										1
ACCGGC/CCGGTG	1	1									2
ACCGTG/ACGGTC	1										1
ACCTCG/AGGTCG	1										1
ACGAGC/CGTGCT										1	1
ACGCCG/CGGCGT	2										2
ACGCGG/CCGCGT	1										1
ACGGCG/CCGTCG	2		1								3
ACGTCC/ACGTGG	1										1
ACGTCG/ACGTCG	1										1
ACTGCG/AGTCGC	1										1
ACTGGG/AGTCCC	1			1							2
AGCCCG/CGGGCT	1										1
AGCCGC/CGGCTG	1	1									2
AGCGCG/CGCGCT	4										4
AGCGGG/CCCGCT			1								1
AGGCGC/CCTGCG	1										1
AGGCGG/CCGCCT					1						1
AGGGCG/CCCTCG			1								1
ATATCG/ATATCG			1								1
ATCCGC/ATGCGG	1										1
ATCGCC/ATGGCG	2										2
ATCGGC/ATGCCG	5										5
CCCGCG/CGCGGG	1										1
CCGGCG/CCGGCG	4										4
