Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-55/megassr/results/hub_GCF_017681445.1/fasta/hub_GCF_017681445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           2434458
Total number of identified SSRs:                 11
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	3
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
GGTT	-		1																			1
GTTG	-		1																			1
TGGT	-		1																			1
AAAAC	1																					1
ACAGC																					1	1
CACAG		2																				2
GCTGT	1																					1
CTCCAG															1							1
GCTGGA													1									1
TATGGC	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
AACC/GGTT	-		3																			3
AAAAC/GTTTT	1																					1
ACAGC/CTGTG	1	2																			1	4
AGCCAT/ATGGCT	1																					1
AGCTCC/AGCTGG													1		1							2
