Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCF_017498305.1/fasta/hub_GCF_017498305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              125
Total size of examined sequences (bp):           6752613
Total number of identified SSRs:                 58
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  16
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	20
6	34

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
GC	-	-	-	2																2
TG	-	-	-	1																1
CAC	-	-					1													1
AAAGC	1																			1
CAAAG		1																		1
CCAAT	2	1																		3
CCCTC	1																			1
CGCCG	2																			2
CTGCG	2																			2
CTGGG	1																			1
GCCGG	1																			1
GCGCC	1																			1
GCTGT		1																		1
GGCGC	1																			1
TGGCG			1																	1
TTGCT	1																			1
TTTGC	1		1																	2
TTTGG	1																			1
AAGATC		1																		1
AGAGCA	1																			1
AGATCA	4	1																		5
AGCAAG		1	1					1												3
AGGCCC	1																			1
ATCTTG																			1	1
CCAGCG	1																			1
CCCAGG	1																			1
CCTGAA		1																		1
CGCCAG	1																			1
CGGTTG		1																		1
GAACTG	1																			1
GAGGAC	1																			1
GCACCA		1																		1
GCCAGC	1																			1
GCCTTG	1																			1
GCTCTT				1																1
GCTGGG	1																			1
GGCCAT	1																			1
GGCGAA	1																			1
TCAAGA						1														1
TCTGGC		1																		1
TGGCCA	1																			1
TGTTCC	1																			1
TTGATC	1	1												1						3
TTTTGC			1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
AC/GT	-	-	-	1																1
CG/CG	-	-	-	2																2
ACC/GGT	-	-					1													1
AAACC/GGTTT	1																			1
AAAGC/CTTTG	3	1	1																	5
AATCC/ATTGG	2	1																		3
ACAGC/CTGTG		1																		1
ACGCC/CGTGG			1																	1
AGCCC/CTGGG	1																			1
AGCGC/CGCTG	2																			2
AGGGG/CCCCT	1																			1
CCCGG/CCGGG	1																			1
CCGCG/CGCGG	4																			4
AAAAGC/CTTTTG			1																	1
AACAGG/CCTGTT	1																			1
AACCGC/CGGTTG		1																		1
AACCTG/AGGTTC		1																		1
AACTGG/AGTTCC	1																			1
AAGAGC/CTCTTG	1	1	1	1				1												5
AAGATC/ATCTTG	5	3				1								1					1	11
AAGGCC/CCTTGG	1																			1
AAGGCG/CCTTCG	1																			1
ACCAGC/CTGGTG		1																		1
ACGAGG/CCTCGT	1																			1
AGAGCC/CTCTGG		1																		1
AGCCCC/CTGGGG	1																			1
AGCGCC/CGCTGG	3																			3
AGGCCC/CCTGGG	2																			2
ATGGCC/ATGGCC	2																			2
