Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-92/megassr/results/hub_GCF_017161155.1/fasta/hub_GCF_017161155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           5746424
Total number of identified SSRs:                 43
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
5	11
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
CG	-	-	-	2	1																						3
GC	-	-	-	1																							1
CAG	-	-	1																								1
CCA	-	-	2																								2
CCG	-	-	3																								3
CGC	-	-	1																								1
CGG	-	-	2																								2
CTG	-	-	2																								2
GAC	-	-	1																								1
GCC	-	-	2	1																							3
GGC	-	-	2																								2
GTC	-	-	1																								1
AATAA	1																										1
AATCA	1																										1
ACCAG	1																										1
CCACG	1																										1
CCCGG	1																										1
CCGCG	1																										1
CTGAC	1																										1
GCTGG			1																								1
GGCGC	1																										1
TCTCT	1																										1
TTTAT	1																										1
AGAGGA	1																										1
CGGCCA	1																										1
CTGGTG	1																										1
CTGGTT		1																									1
GAAGTC	1																										1
GCTCCG		1																									1
GTGGAA	1																										1
TCTTCG	1																										1
TGCGGC	1																										1
TGCTCC																										1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
CG/CG	-	-	-	3	1																						4
ACC/GGT	-	-	2																								2
ACG/CGT	-	-	2																								2
AGC/CTG	-	-	3																								3
CCG/CGG	-	-	10	1																							11
AAAAT/ATTTT	2																										2
AAATC/ATTTG	1																										1
AAGAG/CTCTT	1																										1
ACCAG/CTGGT	1																										1
ACCTG/AGGTC	1																										1
ACGCC/CGTGG	1																										1
AGCCC/CTGGG			1																								1
CCCGG/CCGGG	1																										1
CCGCG/CGCGG	2																										2
AACCAG/CTGGTT		1																									1
AAGACG/CGTCTT	1																										1
AAGAGG/CCTCTT	1																										1
AAGTCG/ACTTCG	1																										1
AAGTGG/ACTTCC	1																										1
ACCAGC/CTGGTG	1																										1
ACGGCC/CCGTGG	1																										1
AGCAGG/CCTGCT																										1	1
AGCCGC/CGGCTG	1																										1
AGCCGG/CCGGCT		1																									1
