Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCF_016901095.1/fasta/hub_GCF_016901095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22
Total size of examined sequences (bp):           4594861
Total number of identified SSRs:                 20
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1	1			2
GC	-	-	-	2				2
CCA	-	-	1					1
CCG	-	-	2					2
CTG	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
GTG	-	-	1					1
CGCGC	2							2
GCGTG	1							1
AAGCGG	2							2
CGACTT	1							1
CGCTGG	1							1
GACAAC							1	1
GCTGGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	3	1			4
ACC/GGT	-	-	2					2
AGC/CTG	-	-	2					2
CCG/CGG	-	-	3					3
ACGCC/CGTGG	1							1
CCGCG/CGCGG	2							2
AACGAC/CGTTGT							1	1
AAGCGG/CCGCTT	2							2
AAGTCG/ACTTCG	1							1
AGCGCC/CGCTGG	2							2
