Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCF_015353175.1/fasta/hub_GCF_015353175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              165
Total size of examined sequences (bp):           4988587
Total number of identified SSRs:                 32
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	9
4	1
5	5
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AGC	-	-	1							1
CAA	-	-	1							1
CGG	-	-	1							1
GCA	-	-	2							2
GCC	-	-	1							1
GCT	-	-	1							1
GGC	-	-	1							1
GTG	-	-	1							1
TTGA	-	1								1
CCCGG	1									1
CCTCG	1									1
GCACC	1									1
GCGGC	1									1
TGCGG	1									1
AGATCC	1									1
AGTAAG					1					1
CAGTCA	1									1
CCATGA							1			1
CGCCAT	1									1
CGCTGG	2									2
GACCAT				1						1
GAGGGC	1									1
GATACC	1									1
GCTGGC	2									2
GGCAGG	1									1
GTTCTG									1	1
TCTTCG	1									1
TGCTGG	1									1
TGTGCC			1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AAC/GTT	-	-	1							1
ACC/GGT	-	-	1							1
AGC/CTG	-	-	4							4
CCG/CGG	-	-	3							3
AATC/ATTG	-	1								1
ACCGC/CGGTG	2									2
AGGCG/CCTCG	1									1
CCCGG/CCGGG	1									1
CCGCG/CGCGG	1									1
AACCAG/CTGGTT									1	1
AAGACG/CGTCTT	1									1
AAGAGT/ACTCTT					1					1
ACAGGC/CCTGTG			1							1
ACAGTC/ACTGTG	1									1
ACCAGC/CTGGTG	1									1
ACCATG/ATGGTC				1			1			2
ACCGAT/ATCGGT	1									1
AGATCC/ATCTGG	1									1
AGCGCC/CGCTGG	4									4
AGGGCG/CCCTCG	1									1
AGGGGC/CCCCTG	1									1
ATCGCC/ATGGCG	1									1
