Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-54/megassr/results/hub_GCF_015234375.1/fasta/hub_GCF_015234375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              45
Total size of examined sequences (bp):           4040679
Total number of identified SSRs:                 27
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	4
6	19

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	2	2
CGC	-	-	1		1
GCG	-	-	1		1
CTCTT	1				1
GCGGC	1				1
GGCAC	1				1
GTTCG	1				1
AAGAGC		1			1
AGCCGT		1			1
CCAGCA	1				1
CCATGA			1		1
CCGGTA	1				1
CGCCAG	1				1
CGGCTG	1				1
GAGGGC	1				1
GCACCG	1				1
GCCCAC	1				1
GCGCCT	1				1
GCTTGT	1				1
GGCCAT	1				1
GGCCGA	1				1
GGCTTG	1				1
GGGCCT	1				1
GGGCGT	1				1
TCGGCT		1			1
TGCTGG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
CCG/CGG	-	-	2		2
AACCG/CGGTT	1				1
AAGAG/CTCTT	1				1
ACGGC/CCGTG	1				1
CCGCG/CGCGG	1				1
AAGAGC/CTCTTG		1			1
AAGCAC/CTTGTG	1				1
AAGCCC/CTTGGG	1				1
AAGCCG/CGGCTT		1			1
ACCAGC/CTGGTG	2				2
ACCATG/ATGGTC			1		1
ACCGGC/CCGGTG	1				1
ACCGGT/ACCGGT	1				1
ACGCCC/CGTGGG	2				2
ACGGCT/AGCCGT		1			1
AGCCGC/CGGCTG	1				1
AGCGCC/CGCTGG	1				1
AGGCCC/CCTGGG	1				1
AGGCCG/CCTCGG	1				1
AGGCGC/CCTGCG	1				1
AGGGCG/CCCTCG	1				1
ATGGCC/ATGGCC	1				1
