Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCF_015208735.1/fasta/hub_GCF_015208735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           4638526
Total number of identified SSRs:                 22
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
4	1
5	4
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
TC	-	-	-	1															1
CAA	-	-	1																1
GTG	-	-	2																2
TCT	-	-	1																1
CTGG	-	1																	1
AGCGC	1																		1
CCTGC	1																		1
GCCCA			1																1
TGCTC																		1	1
AGATCC	1																		1
ATACCA	1																		1
CAGACG	1																		1
CATGAG			1																1
CCATGA											1								1
GACCAT				1															1
GCAAAA				1															1
GCCAGC	1																		1
GCGCTG	1																		1
GGCAAG	1																		1
GGCTGG	1																		1
TGGCGT	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AG/CT	-	-	-	1															1
AAC/GTT	-	-	1																1
AAG/CTT	-	-	1																1
ACC/GGT	-	-	2																2
AGCC/CTGG	-	1																	1
AGAGC/CTCTG																		1	1
AGCCC/CTGGG			1																1
AGCGC/CGCTG	1																		1
AGGGC/CCCTG	1																		1
AAAAGC/CTTTTG				1															1
AACGCC/CGTTGG	1																		1
AAGGGC/CCCTTG	1																		1
AATACC/ATTGGT	1																		1
ACCATG/ATGGTC				1							1								2
ACGCAG/CGTCTG	1																		1
AGATCC/ATCTGG	1																		1
AGCATG/ATGCTC			1																1
AGCCCC/CTGGGG	1																		1
AGCGCC/CGCTGG	2																		2
