Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_015208655.1/fasta/hub_GCF_015208655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              84
Total size of examined sequences (bp):           4636902
Total number of identified SSRs:                 21
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
4	1
5	3
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GA	-	-	-	1								1
CAA	-	-	1									1
GTG	-	-	2									2
TCT	-	-	1									1
CTGG	-	1										1
AGCGC	1											1
CCTGC	1											1
GCCCA			1									1
AGATCC	1											1
CAGACG	1											1
CAGCGC	1											1
CATGAG			1									1
CCAGCC	1											1
CCATGA											1	1
GACCAT				1								1
GCAAAA				1								1
GCCAGC	1											1
GGCAAG	1											1
TGGCGT	1											1
TTGGTA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-	1								1
AAC/GTT	-	-	1									1
AAG/CTT	-	-	1									1
ACC/GGT	-	-	2									2
AGCC/CTGG	-	1										1
AGCCC/CTGGG			1									1
AGCGC/CGCTG	1											1
AGGGC/CCCTG	1											1
AAAAGC/CTTTTG				1								1
AACGCC/CGTTGG	1											1
AAGGGC/CCCTTG	1											1
AATACC/ATTGGT	1											1
ACCATG/ATGGTC				1							1	2
ACGCAG/CGTCTG	1											1
AGATCC/ATCTGG	1											1
AGCATG/ATGCTC			1									1
AGCCCC/CTGGGG	1											1
AGCGCC/CGCTGG	2											2
