Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCF_014773305.1/fasta/hub_GCF_014773305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              141
Total size of examined sequences (bp):           8589491
Total number of identified SSRs:                 144
Number of SSR containing sequences:              63
Number of sequences containing more than 1 SSR:  43
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	24
3	23
4	5
5	28
6	64

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	10	1								11
GC	-	-	-	10	3								13
CAG	-	-	1										1
CAT	-	-	1										1
CCG	-	-	1										1
CGC	-	-	5										5
CGG	-	-	4										4
CTG	-	-	2										2
GCC	-	-	1	1									2
GCG	-	-	4										4
GCT	-	-		1									1
TCA	-	-	1										1
TCG	-	-	1										1
CCGC	-	1											1
CGGC	-	2											2
GGCA	-				1								1
GGCC	-	1											1
CCGCA	1												1
CCGGC	1												1
CCTCG					1								1
CGCCC				1									1
CGCCG	1												1
CGCGA	1												1
CGCGC	5												5
CGCGT	1												1
CGGGC	1												1
CGGGT	1												1
CGTCC	1												1
GCATC		1											1
GCCCG	1												1
GCGCG	7												7
GCGGC	1												1
GGCGC	1												1
GGTCA	1												1
TCGCC	1												1
ACGGCG		1											1
AGCGGC	1												1
AGGGCA					1								1
AGTGCG	1												1
ATCGGC	1												1
CACCGC	1												1
CACGAA	1												1
CACGAC	1												1
CATGAT	1												1
CCACCG		1											1
CCACGA								1					1
CCGCCA	1												1
CCGGTG	1												1
CGAAAG				1									1
CGAAGC	1												1
CGACAT	1												1
CGACGC	1												1
CGACGT	1												1
CGAGCG	1												1
CGAGTG	1												1
CGATGC	1												1
CGCCGG	3												3
CGGATG		1											1
CGGCAG	1												1
CGGGTG	1												1
CGTCGC	1												1
CGTGCC	1												1
CGTGGA	1												1
CTGCGA	1												1
GAGTGT	1												1
GATGCG												1	1
GCCGAC	1												1
GCCGCA	1												1
GCCGTC	1												1
GCCGTG	1												1
GCCGTT	2												2
GCGACG	1												1
GCGAGC	1												1
GCGCGG	1												1
GCGTGT	1												1
GCTTTC		1											1
GGCGCT	1												1
GGCTCA	1												1
GGGGCA	1												1
GGGTGC	1												1
GGTCGA	3												3
GTGATC	1												1
GTTTCG	1												1
TCCCCA		1											1
TCGACC	3												3
TCGATG	1												1
TCGCCG	1												1
TGATCG		1											1
TGCTCG		1											1
TGTGCG											1		1
TTCGGG	1												1
TTGCGC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	20	4								24
ACG/CGT	-	-	1										1
AGC/CTG	-	-	3	1									4
ATC/ATG	-	-	2										2
CCG/CGG	-	-	15	1									16
AGGC/CCTG	-				1								1
CCCG/CGGG	-	1											1
CCGG/CCGG	-	3											3
ACCCG/CGGGT	1												1
ACCGC/CGGTG	1												1
ACCTG/AGGTC	1												1
ACGCG/CGCGT	2												2
ACGGG/CCCGT	1												1
AGGCG/CCTCG	1				1								2
ATCGC/ATGCG		1											1
CCCCG/CGGGG				1									1
CCCGG/CCGGG	3												3
CCGCG/CGCGG	15												15
AAACCG/CGGTTT	1												1
AAAGCG/CGCTTT		1		1									2
AACACG/CGTGTT	1												1
AACCCG/CGGGTT	1												1
AACGGC/CCGTTG	2												2
AAGCCG/CGGCTT	1												1
AAGCGC/CGCTTG	1												1
AAGGGC/CCCTTG					1								1
ACACGC/CGTGTG	1										1		2
ACACTC/AGTGTG	1												1
ACATCG/ATGTCG	2												2
ACCACG/CGTGGT	1							1					2
ACCCGC/CGGGTG	2												2
ACCGCC/CGGTGG	2	1											3
ACCGGC/CCGGTG	1												1
ACCTCG/AGGTCG	6												6
ACGAGC/CGTGCT		1											1
ACGATC/ATCGTG	1	1											2
ACGCCG/CGGCGT	2												2
ACGGCC/CCGTGG	1												1
ACGGCG/CCGTCG	4	1											5
ACGGGC/CCCGTG	1												1
ACGTCC/ACGTGG	1												1
ACGTCG/ACGTCG	1												1
ACTCGC/AGTGCG	2												2
ACTGCG/AGTCGC	1												1
AGCCGC/CGGCTG	1												1
AGCCTG/AGGCTC	1												1
AGCGCC/CGCTGG	1												1
AGCGCG/CGCGCT	2												2
AGCGGC/CCGCTG	2												2
AGGGGC/CCCCTG	1												1
ATCATG/ATCATG	1												1
ATCCCC/ATGGGG		1											1
ATCCGC/ATGCGG		1										1	2
ATCGGC/ATGCCG	2												2
CCCGCG/CGCGGG	1												1
CCGGCG/CCGGCG	3												3
