Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCF_014333415.1/fasta/hub_GCF_014333415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              168
Total size of examined sequences (bp):           6374370
Total number of identified SSRs:                 28
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	5
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	1					1
GT	-	-	-	1					1
TA	-	-	-	1					1
GCT	-	-	1						1
TGG	-	-	2						2
CGGCG	1								1
GCGCA	1								1
GCGGC	3								3
AGAGCA								1	1
AGATCA	1								1
CAGAGC	1								1
CAGCGC	1								1
CCAGCA	1								1
CCAGCC	1								1
CCGGCG	1								1
CCTGGC	1								1
CTGGCC	1								1
GCGGTG	1								1
GGCCAT	1								1
GGCCTG	1								1
GGGCCT	1								1
TCTTGA	1								1
TGAAGA							2		2
TGCAGG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AC/GT	-	-	-	1					1
AT/AT	-	-	-	1					1
CG/CG	-	-	-	1					1
ACC/GGT	-	-	2						2
AGC/CTG	-	-	1						1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	4								4
AAGAGC/CTCTTG								1	1
AAGATC/ATCTTG	2								2
AAGATG/ATCTTC							2		2
ACCAGC/CTGGTG	1								1
ACCGCC/CGGTGG	1								1
ACCTGC/AGGTGC	1								1
AGAGCC/CTCTGG	1								1
AGCCCC/CTGGGG	1								1
AGCGCC/CGCTGG	1								1
AGGCCC/CCTGGG	2								2
AGGGCC/CCCTGG	2								2
ATGGCC/ATGGCC	1								1
CCGGCG/CCGGCG	1								1
