Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCF_013618825.1/fasta/hub_GCF_013618825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           5001870
Total number of identified SSRs:                 24
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	8
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
TA	-	-	-	1		1
ACG	-	-		1		1
CCG	-	-	2			2
CGG	-	-	2			2
GAT	-	-	1			1
TGA	-	-	1			1
TGC	-	-	1			1
TTAT	-	1				1
CGCTG	1					1
GGCGT	1					1
CCATCA	1					1
CGACTT	1					1
CTGGCG	1					1
CTTCAA					1	1
CTTGAG	1					1
GCTGGC	1					1
TGGCAT				1		1
TTCAAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1		1
CG/CG	-	-	-	3	1	4
ACG/CGT	-	-		1		1
AGC/CTG	-	-	1			1
ATC/ATG	-	-	2			2
CCG/CGG	-	-	4			4
AAAT/ATTT	-	1				1
ACGCC/CGTGG	1					1
AGCGC/CGCTG	1					1
AACTTC/AAGTTG	1				1	2
AAGCTC/AGCTTG	1					1
AAGTCG/ACTTCG	1					1
AATGCC/ATTGGC				1		1
ACCATC/ATGGTG	1					1
AGCGCC/CGCTGG	2					2
