Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_013462075.1/fasta/hub_GCF_013462075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1511004
Total number of identified SSRs:                 31
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	9
3	3
4	1
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1					1	2
AT	-	-	-	3	1	1	1																										6
TA	-	-	-	3																													3
CAC	-	-	1																														1
GAA	-	-	1																														1
TCA	-	-	1																														1
GTTA	-				1																												1
AACAT	1																																1
ACATA	1																																1
ACATC	1																																1
ATAGT	1																																1
TATAA	1																																1
TGTGT	1																																1
TTTTA	1																																1
AAAACA	1																																1
ACCATA		1																															1
ACCTGC		1																															1
AGTTGT	1	1	1																														3
TTATCC		1																															1
TTCATC		1																															1
TTGTAG		1																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1					1	2
AT/AT	-	-	-	6	1	1	1																										9
AAG/CTT	-	-	1																														1
ACC/GGT	-	-	1																														1
ATC/ATG	-	-	1																														1
AACT/AGTT	-				1																												1
AAAAT/ATTTT	1																																1
AACAC/GTGTT	1																																1
AACAT/ATGTT	2																																2
AATAT/ATATT	1																																1
ACATC/ATGTG	1																																1
ACTAT/AGTAT	1																																1
AAAAAC/GTTTTT	1																																1
AACCAT/ATGGTT		1																															1
AACTAC/AGTTGT	1	2	1																														4
AAGATG/ATCTTC		1																															1
AAGGAT/ATCCTT		1																															1
ACCTGC/AGGTGC		1																															1
