Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCF_013461855.1/fasta/hub_GCF_013461855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1484713
Total number of identified SSRs:                 28
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	11
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	2
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1
AT	-	-	-	5																	5
TA	-	-	-	6																	6
CAC	-	-	1																		1
TAA	-	-	1																		1
AACAT	1																				1
ACATA	1																				1
ACATC	1																				1
TAATA	1																				1
TATAA	1																				1
TGTGT	1																				1
TTTTA	1																				1
AAAACA	1																				1
ATGTAT		1																			1
CATTAT	1																				1
TTATCC		1																			1
TTGTAG								1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		1	3
AT/AT	-	-	-	11																	11
AAT/ATT	-	-	1																		1
ACC/GGT	-	-	1																		1
AAAAT/ATTTT	1																				1
AACAC/GTGTT	1																				1
AACAT/ATGTT	2																				2
AATAT/ATATT	2																				2
ACATC/ATGTG	1																				1
AAAAAC/GTTTTT	1																				1
AACTAC/AGTTGT								1													1
AAGGAT/ATCCTT		1																			1
AATGAT/ATCATT	1																				1
ACATAT/ATATGT		1																			1
