Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_013461435.1/fasta/hub_GCF_013461435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1505693
Total number of identified SSRs:                 23
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	8
3	2
4	1
5	6
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																1	2
AT	-	-	-	5	1																															6
TA	-	-	-	2																																2
ATA	-	-			1																															1
CAC	-	-	1																																	1
TTAA	-		1																																	1
AACAT	1																																			1
ACATA	1																																			1
ACATC	1																																			1
TATAT	1																																			1
TGTGT	1																																			1
TTTTA	1																																			1
AAAACA	1																																			1
ACCTGC	1																																			1
TCTTTA	1																																			1
TTCATC		1																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																1	2
AT/AT	-	-	-	7	1																															8
AAT/ATT	-	-			1																															1
ACC/GGT	-	-	1																																	1
AATT/AATT	-		1																																	1
AAAAT/ATTTT	1																																			1
AACAC/GTGTT	1																																			1
AACAT/ATGTT	2																																			2
AATAT/ATATT	1																																			1
ACATC/ATGTG	1																																			1
AAAAAC/GTTTTT	1																																			1
AAAGAT/ATCTTT	1																																			1
AAGATG/ATCTTC		1																																		1
ACCTGC/AGGTGC	1																																			1
