Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_013461095.1/fasta/hub_GCF_013461095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1512227
Total number of identified SSRs:                 29
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	8
3	4
4	1
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				1	2
AT	-	-	-	3	1		1																5
TA	-	-	-	3																			3
CAC	-	-	1																				1
GAA	-	-	1																				1
TAA	-	-	1																				1
TCA	-	-	1																				1
GTTA	-			1																			1
AACAT	1																						1
ACATA	1																						1
ACATC	1																						1
ATAGT	1																						1
TATAA	1																						1
TGTGT	1																						1
TTTTA	1																						1
AAAACA	1																						1
ACCATA		1																					1
AGTTGT	1	1																					2
TTATCC		1																					1
TTCATC			1																				1
TTGTAG	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				1	2
AT/AT	-	-	-	6	1		1																8
AAG/CTT	-	-	1																				1
AAT/ATT	-	-	1																				1
ACC/GGT	-	-	1																				1
ATC/ATG	-	-	1																				1
AACT/AGTT	-			1																			1
AAAAT/ATTTT	1																						1
AACAC/GTGTT	1																						1
AACAT/ATGTT	2																						2
AATAT/ATATT	1																						1
ACATC/ATGTG	1																						1
ACTAT/AGTAT	1																						1
AAAAAC/GTTTTT	1																						1
AACCAT/ATGGTT		1																					1
AACTAC/AGTTGT	2	1																					3
AAGATG/ATCTTC			1																				1
AAGGAT/ATCCTT		1																					1
