Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_013460855.1/fasta/hub_GCF_013460855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1486110
Total number of identified SSRs:                 29
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	10
3	2
4	1
5	9
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1			1	2
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1							1
AT	-	-	-	7																							7
TA	-	-	-	3																							3
ATA	-	-			1																						1
CAC	-	-	1																								1
TTTA	-	1																									1
AACAT	1																										1
ACATA	1																										1
ACATC	1																										1
ATTAT	1																										1
TAATA	1																										1
TATAA	1																										1
TGTAA	1																										1
TGTGT	1																										1
TTTTA	1																										1
AAAACA	1																										1
ACCTCA		1																									1
TCTTCA		1																									1
TTATCC	1																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1			1			1	3
AT/AT	-	-	-	10																							10
AAT/ATT	-	-			1																						1
ACC/GGT	-	-	1																								1
AAAT/ATTT	-	1																									1
AAAAT/ATTTT	1																										1
AACAC/GTGTT	1																										1
AACAT/ATGTT	2																										2
AATAT/ATATT	3																										3
AATGT/ACATT	1																										1
ACATC/ATGTG	1																										1
AAAAAC/GTTTTT	1																										1
AACCTC/AGGTTG		1																									1
AAGATG/ATCTTC		1																									1
AAGGAT/ATCCTT	1																										1
