Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_013460375.1/fasta/hub_GCF_013460375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1505922
Total number of identified SSRs:                 32
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	9
3	4
4	1
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1											1	2
AT	-	-	-	4	1		1																													6
TA	-	-	-	3																																3
CAC	-	-	1																																	1
GAA	-	-	1																																	1
TAA	-	-	1																																	1
TCA	-	-	1																																	1
GTTA	-				1																															1
AACAT	1																																			1
ACATA	1																																			1
ACATC	1																																			1
ATAGT	1																																			1
TATAA	1																																			1
TGTGT	1																																			1
TTTTA	1																																			1
AAAACA	1																																			1
ACCATA		1																																		1
ACCTGC		1																																		1
AGTTGT	1	2																																		3
TTATCC		1																																		1
TTCATC		1																																		1
TTGTAG			1																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1											1	2
AT/AT	-	-	-	7	1		1																													9
AAG/CTT	-	-	1																																	1
AAT/ATT	-	-	1																																	1
ACC/GGT	-	-	1																																	1
ATC/ATG	-	-	1																																	1
AACT/AGTT	-				1																															1
AAAAT/ATTTT	1																																			1
AACAC/GTGTT	1																																			1
AACAT/ATGTT	2																																			2
AATAT/ATATT	1																																			1
ACATC/ATGTG	1																																			1
ACTAT/AGTAT	1																																			1
AAAAAC/GTTTTT	1																																			1
AACCAT/ATGGTT		1																																		1
AACTAC/AGTTGT	1	2	1																																	4
AAGATG/ATCTTC		1																																		1
AAGGAT/ATCCTT		1																																		1
ACCTGC/AGGTGC		1																																		1
