Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCF_013406925.1/fasta/hub_GCF_013406925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              143
Total size of examined sequences (bp):           1881135
Total number of identified SSRs:                 15
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CT	-	-	-			1	1
GCC	-	-	1				1
GGC	-	-	1				1
AAATT	1						1
ATTTT	3						3
CAAAA	1						1
TATTT	1						1
AAATCC	1						1
AAATTT	1						1
GCAAAA	1						1
GCGGTA	1						1
TAAATT	1						1
TATTCC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-			1	1
CCG/CGG	-	-	2				2
AAAAC/GTTTT	1						1
AAAAT/ATTTT	4						4
AAATT/AATTT	1						1
AAAAGC/CTTTTG	1						1
AAATCC/ATTTGG	1						1
AAATTT/AAATTT	2						2
AATAGG/ATTCCT	1						1
ACCGCT/AGCGGT	1						1
