Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_013187615.1/fasta/hub_GCF_013187615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              296
Total size of examined sequences (bp):           5615075
Total number of identified SSRs:                 43
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	15
4	1
5	8
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	2		2
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	4			4
CGG	-	-	1			1
CTG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1			1
GGC	-	-		1		1
GTC	-	-		1		1
TCG	-	-	1			1
CTGG	-	1				1
AATAA	1					1
ATTTT	1					1
CCACG	1					1
CCCGG	1					1
CGCGG	1					1
GGCGC	1					1
TTATC	1					1
TTTAT	1					1
AGCATC	1					1
CGGCGA	1					1
CTGCTC		1				1
GAACAA	1					1
GAAGTC	1					1
GACGAA	1					1
GAGTCG	4					4
GCTCCG		1				1
GGGGCT	1					1
GTGCTG				1		1
GTGGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1	1		2
AGC/CTG	-	-	4			4
CCG/CGG	-	-	7	1		8
AGCC/CTGG	-	1				1
AAAAT/ATTTT	3					3
AAGAT/ATCTT	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AACAAG/CTTGTT	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG				1		1
ACGGCG/CCGTCG	1					1
ACTCCG/AGTCGG	4					4
AGCAGG/CCTGCT		1				1
AGCATC/ATGCTG	1					1
AGCCCC/CTGGGG	1					1
AGCCGG/CCGGCT		1				1
