Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCF_011777485.1/fasta/hub_GCF_011777485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           4822642
Total number of identified SSRs:                 70
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  20
Number of SSRs present in compound formation:    8


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	5
4	1
5	6
6	52

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AT	-	-	-	1																	1
CG	-	-	-	4																	4
GC	-	-	-	1																	1
ACC	-	-	1																		1
CGG	-	-	1																		1
GCC	-	-	1																		1
GGC	-	-	1	1																	2
CTGG	-	1																			1
ACGCC	1																				1
GCCCA	2																				2
GCCGC	1																				1
GGCAG	1																				1
TCGCT	1																				1
AAAGCC	1																				1
AACAGC				1																	1
AACTGC																				1	1
AAGATC				3										1							4
AAGGCG	1																				1
AGAGCA		1																			1
AGCAAC	1	1						1													3
AGCAAG																1					1
ATCAAG		1																			1
CAACAG			1																		1
CAAGAG					1																1
CAAGAT					2			1		1	1										5
CAGGCG	1																				1
CAGGTT	1																				1
CCAGCC		1																			1
CCAGGC	1																				1
CCCAGG	1																				1
CCGGCT	1																				1
CCTTGA	1																				1
CTGATC			1																		1
CTTGGG	1																				1
GACGAA	1																				1
GCAACA									1												1
GCAACG	1		1									1									3
GCAACT						1															1
GCAGAG				1																	1
GCCGTT							1														1
GCGGGA			1																		1
GGCGCT	1																				1
GTTGCT								1													1
TCGCTC	1																				1
TCTTGA			2																		2
TGACCT	1																				1
TGCCGC			1																		1
TGGGCA		1																			1
TGTTCC	1																				1
TTGATC		1	1													1					3
TTGCCG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AT/AT	-	-	-	1																	1
CG/CG	-	-	-	5																	5
ACC/GGT	-	-	1																		1
CCG/CGG	-	-	3	1																	4
AGCC/CTGG	-	1																			1
AAGCG/CGCTT	1																				1
ACGCC/CGTGG	1																				1
AGCCC/CTGGG	2																				2
AGGGC/CCCTG	1																				1
CCGCG/CGCGG	1																				1
AAAGCC/CTTTGG	1																				1
AACAGC/CTGTTG	1	1	1	1				2	1												7
AACAGG/CCTGTT	1																				1
AACCTG/AGGTTC	1																				1
AACGGC/CCGTTG	2		1				1					1									5
AACTGC/AGTTGC						1														1	2
AAGACG/CGTCTT	1																				1
AAGAGC/CTCTTG		1			1											1					3
AAGATC/ATCTTG		2	3	3	2			1		1	1			1		1					15
AAGCCC/CTTGGG	1																				1
AAGGCG/CCTTCG	1																				1
AAGGTC/ACCTTG	2																				2
AGAGCG/CGCTCT	1																				1
AGAGGC/CCTCTG				1																	1
AGCCCC/CTGGGG		1																			1
AGCCGG/CCGGCT	1																				1
AGCGCC/CGCTGG	1																				1
AGCGGC/CCGCTG			1																		1
AGCGGG/CCCGCT			1																		1
AGGATC/ATCCTG			1																		1
AGGCCC/CCTGGG	2																				2
AGGCGC/CCTGCG	1																				1
ATGCCC/ATGGGC		1																			1
