Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_011684105.1/fasta/hub_GCF_011684105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           5105593
Total number of identified SSRs:                 56
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	23
4	3
5	7
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	4								4
GC	-	-	-	6								6
CAG	-	-	1									1
CCG	-	-	2									2
CGC	-	-	4	1								5
CGG	-	-	4									4
CTG	-	-	3									3
GCA	-	-	1									1
GCC	-	-	2	1								3
GCG	-	-	1									1
GGC	-	-	1									1
GTG	-	-	1									1
TGC	-	-	1									1
ATTT	-	1										1
CGGC	-	1										1
TTAT	-		1									1
AAACA	1											1
CGCCG	1											1
CGGCG	1											1
GCGCG	2											2
GCGGC	2											2
AAAACC	1											1
ATCTAT		1										1
CGCCAG	1											1
CGCCTG	1											1
CGGCAC	1											1
CGGCGA	1											1
CTGGCG	1											1
GAGCCG	1											1
GCCGGT	1											1
GCGGTG	1											1
GCTCTG											1	1
GCTGGC	1											1
TGCCGG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	10								10
ACC/GGT	-	-	1									1
AGC/CTG	-	-	6									6
CCG/CGG	-	-	14	2								16
AAAT/ATTT	-	1	1									2
CCGG/CCGG	-	1										1
AAAAC/GTTTT	1											1
CCGCG/CGCGG	6											6
AAAACC/GGTTTT	1											1
ACCGCC/CGGTGG	1											1
ACCGGC/CCGGTG	3											3
ACGGCG/CCGTCG	1											1
AGAGCC/CTCTGG											1	1
AGATAT/ATATCT		1										1
AGCCGG/CCGGCT	1											1
AGCGCC/CGCTGG	3											3
AGGCGC/CCTGCG	1											1
