Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCF_011464815.1/fasta/hub_GCF_011464815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1017283
Total number of identified SSRs:                 18
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	3
5	6
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
TA	-	-	-	2						1	1		2	6
AAT	-	-	1	1	1									3
ATAAT	1													1
ATATT	1													1
CAAAA	1													1
CTTTT	1													1
TTATT	1													1
TTTTA	1													1
AGAAAA	1													1
GAAAAA	1													1
TTTAAG	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT/AT	-	-	-	2						1	1		2	6
AAT/ATT	-	-	1	1	1									3
AAAAC/GTTTT	1													1
AAAAG/CTTTT	1													1
AAAAT/ATTTT	2													2
AATAT/ATATT	2													2
AAAAAG/CTTTTT	2													2
AAACTT/AAGTTT	1													1
