Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCF_011464655.1/fasta/hub_GCF_011464655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1017297
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	6
3	3
5	6
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2
TA	-	-	-	2							2		2							6
AAT	-	-	1	2																3
ATAAT	1																			1
ATATT	1																			1
CAAAA	1																			1
CTTTT	1																			1
TTATT	1																			1
TTTTA	1																			1
AGAAAA	1																			1
GAAAAA	1																			1
TTTAAG	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2
AT/AT	-	-	-	2							2		2							6
AAT/ATT	-	-	1	2																3
AAAAC/GTTTT	1																			1
AAAAG/CTTTT	1																			1
AAAAT/ATTTT	2																			2
AATAT/ATATT	2																			2
AAAAAG/CTTTTT	2																			2
AAACTT/AAGTTT	1																			1
