Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCF_011464375.1/fasta/hub_GCF_011464375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1016757
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	2
5	6
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT	-	-	-		1														1
TA	-	-	-	3								1	1	1					6
AAT	-	-		2															2
ATAAT	1																		1
ATATT	1																		1
CAAAA	1																		1
CTTTT	1																		1
TTATT	1																		1
TTTTA	1																		1
AGAAAA	1																		1
ATCAAT	1																		1
GAAAAA	1																		1
TTTAAG	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-	3	1							1	1	1					7
AAT/ATT	-	-		2															2
AAAAC/GTTTT	1																		1
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	2																		2
AATAT/ATATT	2																		2
AAAAAG/CTTTTT	2																		2
AAACTT/AAGTTT	1																		1
AATATC/ATATTG	1																		1
