Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCF_011463755.1/fasta/hub_GCF_011463755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1016734
Total number of identified SSRs:                 18
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	2
5	6
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
TA	-	-	-	3							1		1	1	6
AAT	-	-	1	1											2
ATAAT	1														1
ATATT	1														1
CAAAA	1														1
CTTTT	1														1
TTATT	1														1
TTTTA	1														1
AGAAAA	1														1
ATCAAT	1														1
GAAAAA	1														1
TTTAAG	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT/AT	-	-	-	3							1		1	1	6
AAT/ATT	-	-	1	1											2
AAAAC/GTTTT	1														1
AAAAG/CTTTT	1														1
AAAAT/ATTTT	2														2
AATAT/ATATT	2														2
AAAAAG/CTTTTT	2														2
AAACTT/AAGTTT	1														1
AATATC/ATATTG	1														1
