Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCF_009905335.1/fasta/hub_GCF_009905335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5823634
Total number of identified SSRs:                 43
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	19
5	5
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	2		2
TA	-	-	-	1		1
ACC	-	-	1			1
CAG	-	-	2			2
CCG	-	-	4			4
CGC	-	-	2			2
CGG	-	-	1			1
CTG	-	-	2			2
GCA	-	-	2			2
GCC	-	-	1			1
GCG	-	-	2			2
GCT	-	-		1		1
GGC	-	-	1			1
CCAGC	1					1
CGCCG	2					2
CTCGC	1					1
GGGGA	1					1
ATCGGA	1					1
ATCTGA		1				1
CAGCGC	2					2
CCGTGG		1				1
CCTGAA					1	1
CGACTG	1					1
GAAGTC	1					1
GCCAGC	1					1
GCCGTT	1					1
GCTCCG	1					1
GTATCG	1					1
TGCTGG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1		1
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
AGC/CTG	-	-	6	1		7
CCG/CGG	-	-	11			11
AGCCC/CTGGG	1					1
AGGCG/CCTCG	1					1
AGGGG/CCCCT	1					1
CCGCG/CGCGG	2					2
AACCTG/AGGTTC					1	1
AACGGC/CCGTTG	1					1
AAGTCG/ACTTCG	1					1
AATCGG/ATTCCG	1					1
AATCTG/AGATTC		1				1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACGGCC/CCGTGG		1				1
ACTGCG/AGTCGC	1					1
AGCCGG/CCGGCT	1					1
AGCGCC/CGCTGG	3					3
