Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCF_009905315.1/fasta/hub_GCF_009905315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5034577
Total number of identified SSRs:                 18
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	1					1
CCG	-	-	2						2
CGA	-	-	1						1
TGA	-	-	2						2
AAAT	-	1							1
AGCGC	1								1
CGCGG	1								1
CGCTG	1								1
TCTTC			1						1
ACACCA								1	1
CAGAGC				1					1
CCATCG						1			1
CTGGCG	1								1
GAAGTC	1								1
GCCGAG	1								1
GCGCCA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	1					1
ACG/CGT	-	-	1						1
ATC/ATG	-	-	2						2
CCG/CGG	-	-	2						2
AAAT/ATTT	-	1							1
AAGAG/CTCTT			1						1
AGCGC/CGCTG	2								2
CCGCG/CGCGG	1								1
AACACC/GGTGTT								1	1
AAGTCG/ACTTCG	1								1
AGAGCC/CTCTGG				1					1
AGCGCC/CGCTGG	2								2
AGGCCG/CCTCGG	1								1
ATCGCC/ATGGCG						1			1
