Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCF_009905295.1/fasta/hub_GCF_009905295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5155009
Total number of identified SSRs:                 59
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	12
3	23
4	1
5	12
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	6		6
GC	-	-	-	4	2	6
AGC	-	-		1		1
CAG	-	-	1			1
CCG	-	-	2			2
CGC	-	-	4	1		5
CGG	-	-	4			4
CTG	-	-	1			1
GCA	-	-	2			2
GCC	-	-	2			2
GCG	-	-	1			1
GCT	-	-		1		1
GGC	-	-	1			1
TGC	-	-	1			1
TGT	-	-	1			1
CAGC	-	1				1
AAACA	1					1
AACCG	1					1
CCAAA	1					1
CGCCG	2					2
CGGCG	2					2
GCCAG	1					1
GCGCG	1					1
GCGGC	1					1
GGCGC	2					2
AAAACC	1					1
AATTAA	1					1
ATGTGC	1					1
CGATGC	1					1
CGCCAG	1					1
CGGCAC	1					1
CGGCGA	1					1
GCCGGT	1					1
GCTGGC	1					1
TGCCGG	1					1
TGGCGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	10	2	12
AAC/GTT	-	-	1			1
AGC/CTG	-	-	5	2		7
CCG/CGG	-	-	14	1		15
AGCC/CTGG	-	1				1
AAAAC/GTTTT	1					1
AAACC/GGTTT	1					1
AACCG/CGGTT	1					1
AGGCC/CCTGG	1					1
CCGCG/CGCGG	8					8
AAAACC/GGTTTT	1					1
AAAATT/AATTTT	1					1
ACATGC/ATGTGC	1					1
ACCGGC/CCGGTG	3					3
ACGGCG/CCGTCG	1					1
AGCGCC/CGCTGG	3					3
ATCGGC/ATGCCG	1					1
