Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCF_009831785.3/fasta/hub_GCF_009831785.3_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7
Total size of examined sequences (bp):           3407440
Total number of identified SSRs:                 45
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    15


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	15
2	4
3	8
4	3
5	5
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1	1	1	2	2	1	1		1		1																													1	15
AT	-	-	-	1																																																								1
CG	-	-	-	1																																																								1
GC	-	-	-	2																																																								2
CAG	-	-	1																																																									1
CCA	-	-	1																																																									1
CCG	-	-	1	1																																																								2
GAT	-	-					1																																																					1
GCA	-	-	1																																																									1
GCC	-	-	1																																																									1
TCT	-	-					1																																																					1
ATAG	-																																1																											1
CTGG	-	1																																																										1
GCTG	-	1																																																										1
AGCAC	1																																																											1
AGCGC	1																																																											1
CCAGC		1																																																										1
CGCAG	1																																																											1
GCGCC	1																																																											1
ATATCG	1																																																											1
ATCTTA			1																																																									1
ATGATA		1																																																										1
CGACAC							1																																																					1
GCTCCT	1																																																											1
GGCGCA			1																																																									1
GGTGAT	1																																																											1
GTGTCG							1																																																					1
TGGCGG			1																																																									1
TTTTCG	1																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1	1	1	2	2	1	1		1		1																													1	15
AT/AT	-	-	-	1																																																								1
CG/CG	-	-	-	3																																																								3
AAG/CTT	-	-					1																																																					1
ACC/GGT	-	-	1																																																									1
AGC/CTG	-	-	2																																																									2
ATC/ATG	-	-					1																																																					1
CCG/CGG	-	-	2	1																																																								3
AGAT/ATCT	-																																1																											1
AGCC/CTGG	-	2																																																										2
ACAGC/CTGTG	1																																																											1
AGCCC/CTGGG		1																																																										1
AGCGC/CGCTG	2																																																											2
CCGCG/CGCGG	1																																																											1
AAAACG/CGTTTT	1																																																											1
AAGATT/AATCTT			1																																																									1
AATGAT/ATCATT		1																																																										1
ACACCG/CGGTGT							2																																																					2
ACCATC/ATGGTG	1																																																											1
ACCGCC/CGGTGG			1																																																									1
AGCAGG/CCTGCT	1																																																											1
AGGCGC/CCTGCG			1																																																									1
ATATCG/ATATCG	1																																																											1
