Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-72/megassr/results/hub_GCF_009728855.1/fasta/hub_GCF_009728855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1455371
Total number of identified SSRs:                 24
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	13
3	3
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AT	-	-	-	4	3		2		1												10
TA	-	-	-	3																	3
CAC	-	-		1																	1
GAT	-	-			1																1
TAA	-	-	1																		1
ACATC	1																				1
ATATT	1																				1
TAAAT	1																				1
TTTTA	1																				1
AGCTGC	1																				1
TAGTAT	1																				1
TCCTAG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AT/AT	-	-	-	7	3		2		1												13
AAT/ATT	-	-	1																		1
ACC/GGT	-	-		1																	1
ATC/ATG	-	-			1																1
AAAAT/ATTTT	1																				1
AAATT/AATTT	1																				1
AATAT/ATATT	1																				1
ACATC/ATGTG	1																				1
AATACT/AGTATT	1																				1
ACTAGG/AGTCCT	1																				1
AGCTGC/AGCTGC	1																				1
