Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCF_009728835.1/fasta/hub_GCF_009728835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1451340
Total number of identified SSRs:                 23
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	13
3	3
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	4	4		1		1	10
TA	-	-	-	3						3
CAC	-	-		1						1
GAT	-	-			1					1
TAA	-	-	1							1
ACATC	1									1
ATATT	1									1
TAAAT	1									1
TTTTA	1									1
AGCTGC	1									1
TAGTAT	1									1
TCCTAG	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	7	4		1		1	13
AAT/ATT	-	-	1							1
ACC/GGT	-	-		1						1
ATC/ATG	-	-			1					1
AAAAT/ATTTT	1									1
AAATT/AATTT	1									1
AATAT/ATATT	1									1
ACATC/ATGTG	1									1
AATACT/AGTATT	1									1
ACTAGG/AGTCCT	1									1
AGCTGC/AGCTGC	1									1
