Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCF_009728815.1/fasta/hub_GCF_009728815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1449311
Total number of identified SSRs:                 24
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	13
3	4
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	4	3		2	1	10
TA	-	-	-	3					3
CAC	-	-		1					1
CTT	-	-			1				1
GAT	-	-			1				1
TAA	-	-	1						1
ACATC	1								1
ATATT	1								1
TAAAT	1								1
TTTTA	1								1
AGCTGC	1								1
TAGTAT	1								1
TCCTAG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	7	3		2	1	13
AAG/CTT	-	-			1				1
AAT/ATT	-	-	1						1
ACC/GGT	-	-		1					1
ATC/ATG	-	-			1				1
AAAAT/ATTTT	1								1
AAATT/AATTT	1								1
AATAT/ATATT	1								1
ACATC/ATGTG	1								1
AATACT/AGTATT	1								1
ACTAGG/AGTCCT	1								1
AGCTGC/AGCTGC	1								1
