Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCF_009604405.1/fasta/hub_GCF_009604405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              59
Total size of examined sequences (bp):           8539590
Total number of identified SSRs:                 168
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  24
Number of SSRs present in compound formation:    20


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	1
5	98
6	60

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
CG	-	-	-	1																								1
GC	-	-	-	1																								1
CAC	-	-	1																									1
CAG	-	-		1																								1
CGC	-	-	1																									1
GCC	-	-	1																									1
GCG	-	-	2																									2
GTG	-	-	1																									1
ATTT	-	1																										1
ACCGG		1																										1
ACTGT	1																											1
CACCC	2																											2
CAGCA	1																											1
CCCCG	1																											1
CCCGC	1																											1
CCCGG	1																											1
CCGAG	1																											1
CCGCG	2																											2
CCGGA	2																											2
CCGGG	2																											2
CGCCG	2																											2
CGCGG	2																											2
CGGAG	23																											23
CGGCC	2																											2
CGGCG	1																											1
CGGCT																											1	1
CGGGG	1																											1
CGGTG													1															1
CGTCA	1																											1
CTCCG	20	1																										21
CTGCG	1																											1
CTGTG													1															1
GACCT	1																											1
GAGGG	1																											1
GCACG	1																											1
GCCCG	2																											2
GCCGA	2																											2
GCCGC	2																											2
GCGAG	1																											1
GCGCG	1																											1
GCGGC	1																											1
GCGGT	1																											1
GGATC	1																											1
GGCCG	3																											3
GGCTG	1																											1
GGGCG	1	1																										2
GTGCG	2	1																										3
GTGGG	1																											1
TCGGA	1																											1
TGCCC	1																											1
ATCGCC		1																										1
ATCGGC	1																											1
CAACGA							1																					1
CAACGG	1																											1
CACCAG	1																											1
CACGGC		1																										1
CAGCGA	1							1																				2
CAGCGG									1																			1
CATCGC				1																								1
CCGATG		1																										1
CCGCAC	1																											1
CCGCGC	1																											1
CCGGAT	1																											1
CGAAGC																			1									1
CGACCA	1																											1
CGACGC	1																											1
CGACGG										1																		1
CGAGGT		1																										1
CGATGC						1	1																					2
CGCCAG		1																										1
CGCCGA	1																											1
CGCGAC	1																											1
CGCGGG	1																											1
CGGCAG				1																								1
CGGGAT	1																											1
CGTAGT	1																											1
CGTCGC	1																											1
CGTTGC		1				1																						2
CTGGCG	1																											1
GATGCC	1																											1
GCAACG								1																				1
GCCCGT				1																								1
GCCGAT	1					1																						2
GCCTGC	1																											1
GCGATG	1																											1
GCGCGG	4																											4
GCTGGG		1																										1
GGCGTT	1																											1
GGGCGG	1																											1
GGGGCT	1																											1
GGGGTG	1																											1
GGTGCC	1																											1
GGTGTC	1																											1
GTAGGT	2																											2
GTCGGT				1																								1
GTTCCT	1																											1
TCGCGG	1																											1
TCGCTG	1																											1
TCGGCG	1																											1
TGCCGC		1																										1
TGCGGC	1																											1
TTGGTG	1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
CG/CG	-	-	-	2																								2
ACC/GGT	-	-	2																									2
AGC/CTG	-	-		1																								1
CCG/CGG	-	-	4																									4
AAAT/ATTT	-	1																										1
ACAGC/CTGTG	1												1															2
ACAGT/ACTGT	1																											1
ACCCC/GGGGT	3																											3
ACCGC/CGGTG	3	1											1															5
ACCGG/CCGGT	2	1																										3
ACCTG/AGGTC	1																											1
ACGGC/CCGTG	1																											1
ACGTC/ACGTG	1																											1
AGCCC/CTGGG	1																											1
AGCCG/CGGCT	3																										1	4
AGCGC/CGCTG	1																											1
AGCGG/CCGCT	43	1																										44
AGGCG/CCTCG	1																											1
AGGGC/CCCTG	1																											1
AGGGG/CCCCT	1																											1
ATCCG/ATCGG	2																											2
CCCCG/CGGGG	4	1																										5
CCCGG/CCGGG	10																											10
CCGCG/CGCGG	11																											11
AACACC/GGTGTT	1																											1
AACAGG/CCTGTT	1																											1
AACGAC/CGTTGT							1																					1
AACGCC/CGTTGG	1																											1
AACGGC/CCGTTG	1	1				1		1																				4
AAGCCG/CGGCTT																			1									1
ACACCG/CGGTGT	1			1																								2
ACACCT/AGGTGT	2																											2
ACAGCG/CGCTGT	2							1																				3
ACCACG/CGTGGT	1																											1
ACCAGC/CTGGTG	1																											1
ACCCCC/GGGGGT	1																											1
ACCCGC/CGGGTG	1																											1
ACCGCG/CGCGGT	2																											2
ACCGGC/CCGGTG	1																											1
ACCTCG/AGGTCG		1																										1
ACGACT/AGTCGT	1																											1
ACGCCG/CGGCGT	3																											3
ACGGCC/CCGTGG		1																										1
ACGGCG/CCGTCG	1									1																		2
ACGGGC/CCCGTG				1																								1
AGCCCC/CTGGGG	1	1																										2
AGCCGC/CGGCTG	1																											1
AGCGCC/CGCTGG	1	1																										2
AGCGGC/CCGCTG		1		1					1																			3
AGGCGC/CCTGCG	1																											1
ATCCCG/ATCGGG	1																											1
ATCCGG/ATCCGG	1																											1
ATCGCC/ATGGCG	1	1		1																								3
ATCGGC/ATGCCG	3	1				2	1																					7
CCCCCG/CGGGGG	1																											1
CCCGCG/CGCGGG	6																											6
