Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCF_008801495.1/fasta/hub_GCF_008801495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              878
Total size of examined sequences (bp):           6553028
Total number of identified SSRs:                 28
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
5	8
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
GC	-	-	-	1			1
ACC	-	-	1				1
GCC	-	-	2				2
GCG	-	-	1				1
AATTC	1						1
ACGGC	1						1
CAGGA	1						1
CGCCG	1						1
CGGCG	1						1
GCGGC	1						1
GGCAG	1						1
TGCCG	1						1
ACCTGC	1						1
CAAGCC	1						1
CAGGCC	1						1
CCAGCC			1				1
CCATCG		1					1
CCTGGC	1						1
CGGTGC	1						1
GCTCTG	1						1
GGCCAT	1						1
GGTGCT						1	1
GGTGGC	1						1
GTGGCG	1						1
TGGTGC	1						1
TGTGGG	1						1
TTGATC		1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	1			1
ACC/GGT	-	-	1				1
CCG/CGG	-	-	3				3
AATTC/AATTG	1						1
ACAGG/CCTGT	1						1
ACGGC/CCGTG	2						2
AGGGC/CCCTG	1						1
CCGCG/CGCGG	3						3
AAGATC/ATCTTG		1					1
AAGCCC/CTTGGG	1						1
ACACCC/GGGTGT	1						1
ACCAGC/CTGGTG	1					1	2
ACCGCC/CGGTGG	2						2
ACCGGC/CCGGTG	1						1
ACCTGC/AGGTGC	1						1
AGAGCC/CTCTGG	1						1
AGCCCC/CTGGGG			1				1
AGGCCC/CCTGGG	1						1
AGGGCC/CCCTGG	1						1
ATCGCC/ATGGCG		1					1
ATGGCC/ATGGCC	1						1
