Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCF_007990055.1/fasta/hub_GCF_007990055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           4346664
Total number of identified SSRs:                 73
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13
2	1
3	30
4	1
5	9
6	19

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1					1		2	1	1		1		2						1	12
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1															1
CA	-	-	-	1																																				1
CCA	-	-	2																																					2
CCG	-	-	4																																					4
CGC	-	-	5																																					5
CGG	-	-	2																																					2
GAC	-	-	1																																					1
GCC	-	-	9																																					9
GCG	-	-	3																																					3
GGC	-	-	1																																					1
GGT	-	-	1	1																																				2
TGA	-	-	1																																					1
GGCC	-	1																																						1
ACCCG	1																																							1
CCCGG	1																																							1
CGCCG	1																																							1
CGGCG	1																																							1
CGTCG	1																																							1
GCGGC	1																																							1
GGCGC	1																																							1
GGCGG	1																																							1
TCGGT	1																																							1
ACAACG	1																																							1
ACCGCC	1																																							1
CAGCAC	1																																							1
CCGCGC	1																																							1
CGAATA		1																																						1
CGCGAC	1																																							1
CGGCGA	1	1																																						2
CGGGGC	1																																							1
CGTCGG	1																																							1
CTCCGG	1																																							1
GCACCA	1																																							1
GCCCAT	1																																							1
GCCCGC	1																																							1
GGCGGT	1																																							1
GGGCCG	1																																							1
TCGATG	1																																							1
TGGCCG	1																																							1
TGGCGG	1																																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1					2		2	1	1		1		2						1	13
AC/GT	-	-	-	1																																				1
ACC/GGT	-	-	3	1																																				4
ACG/CGT	-	-	1																																					1
ATC/ATG	-	-	1																																					1
CCG/CGG	-	-	24																																					24
CCGG/CCGG	-	1																																						1
AACCG/CGGTT	1																																							1
ACCCG/CGGGT	1																																							1
ACGCG/CGCGT	1																																							1
CCCCG/CGGGG	1																																							1
CCCGG/CCGGG	1																																							1
CCGCG/CGCGG	4																																							4
AACGAC/CGTTGT	1																																							1
AATACG/ATTCGT		1																																						1
ACATCG/ATGTCG	1																																							1
ACCAGC/CTGGTG	2																																							2
ACCGCC/CGGTGG	3																																							3
ACCGCG/CGCGGT	1																																							1
ACGCCG/CGGCGT	1																																							1
ACGGCC/CCGTGG	1																																							1
ACGGCG/CCGTCG	1	1																																						2
AGCCGG/CCGGCT	1																																							1
ATGCCC/ATGGGC	1																																							1
CCCCGG/CCGGGG	2																																							2
CCCGCG/CGCGGG	2																																							2
