Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_007989925.1/fasta/hub_GCF_007989925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           4358624
Total number of identified SSRs:                 62
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	31
4	1
5	9
6	19

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1	1
CA	-	-	-	1																						1
CCA	-	-	2																							2
CCG	-	-	4																							4
CGC	-	-	5																							5
CGG	-	-	3																							3
CGT	-	-	1																							1
GCC	-	-	6																							6
GCG	-	-	3																							3
GGC	-	-	4																							4
GGT	-	-	1	1																						2
TGA	-	-	1																							1
GGCC	-	1																								1
ACCCG	1																									1
CCCGG	1																									1
CGCCG	1																									1
CGGCG	1																									1
CGTCG	1																									1
GCGGC	1																									1
GGCGC	1																									1
GGCGG	1																									1
TCGGT	1																									1
ACCGCC	1																									1
CGAATA		1																								1
CGCGAC	1																									1
CGGCGA	1	1																								2
CGGGGC	1																									1
CGTCGG	1																									1
CGTTGT	1																									1
CTCCGG	1																									1
CTGGTG	1																									1
GCACCA	1																									1
GCCCAT	1																									1
GCCCGC	1																									1
GGCGCG	1																									1
GGCGGT	1																									1
GGGCCG	1																									1
TCGATG	1																									1
TGGCCG	1																									1
TGGCGG	1																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1	1
AC/GT	-	-	-	1																						1
ACC/GGT	-	-	3	1																						4
ACG/CGT	-	-	1																							1
ATC/ATG	-	-	1																							1
CCG/CGG	-	-	25																							25
CCGG/CCGG	-	1																								1
AACCG/CGGTT	1																									1
ACCCG/CGGGT	1																									1
ACGCG/CGCGT	1																									1
CCCCG/CGGGG	1																									1
CCCGG/CCGGG	1																									1
CCGCG/CGCGG	4																									4
AACGAC/CGTTGT	1																									1
AATACG/ATTCGT		1																								1
ACATCG/ATGTCG	1																									1
ACCAGC/CTGGTG	2																									2
ACCGCC/CGGTGG	3																									3
ACCGCG/CGCGGT	1																									1
ACGCCG/CGGCGT	1																									1
ACGGCC/CCGTGG	1																									1
ACGGCG/CCGTCG	1	1																								2
AGCCGG/CCGGCT	1																									1
ATGCCC/ATGGGC	1																									1
CCCCGG/CCGGGG	2																									2
CCCGCG/CGCGGG	2																									2
