Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCF_007989875.1/fasta/hub_GCF_007989875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           4536331
Total number of identified SSRs:                 67
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	33
4	3
5	9
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-											1	1
GT	-	-	-	1																									1
CAC	-	-	1																										1
CCA	-	-	1	1																									2
CCG	-	-	4																										4
CGC	-	-	1																										1
CGG	-	-	7																										7
GAC	-	-	1																										1
GCC	-	-	5																										5
GCG	-	-	6																										6
GGC	-	-	4																										4
GTG	-	-	1																										1
TCA	-	-	1																										1
GGCC	-	3																											3
ACCGA	1																												1
CCGCC	1																												1
CCGCG	1																												1
CCGGG	1																												1
CGACG	1																												1
CGCGC	1																												1
CGGCG	1																												1
GCGCC	1																												1
TCGGG	1																												1
ACAACG	1																												1
ACCGCC	3																												3
CAGCAC	1																												1
CATGGG	1																												1
CCGCGC	1																												1
CCGGAG	1																												1
CCGGCC	1																												1
CGACAT	1																												1
CGCGGG	1																												1
CGGCCA	1																												1
CGTATT		1																											1
CGTCGC	1	1																											2
GCCGAC	1																												1
GGCCCC	1																												1
GGCGGT	1																												1
GTCGCG	1																												1
TGCTGG	1																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-											1	1
AC/GT	-	-	-	1																									1
ACC/GGT	-	-	3	1																									4
ACG/CGT	-	-	1																										1
ATC/ATG	-	-	1																										1
CCG/CGG	-	-	27																										27
CCGG/CCGG	-	3																											3
AACCG/CGGTT	1																												1
ACCCG/CGGGT	1																												1
ACGCG/CGCGT	1																												1
CCCCG/CGGGG	1																												1
CCCGG/CCGGG	1																												1
CCGCG/CGCGG	4																												4
AACGAC/CGTTGT	1																												1
AATACG/ATTCGT		1																											1
ACATCG/ATGTCG	1																												1
ACCAGC/CTGGTG	2																												2
ACCGCC/CGGTGG	4																												4
ACCGCG/CGCGGT	1																												1
ACGCCG/CGGCGT	1																												1
ACGGCC/CCGTGG	1																												1
ACGGCG/CCGTCG	1	1																											2
AGCCGG/CCGGCT	1																												1
ATGCCC/ATGGGC	1																												1
CCCCGG/CCGGGG	2																												2
CCCGCG/CGCGGG	2																												2
