Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_007625195.1/fasta/hub_GCF_007625195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              101
Total size of examined sequences (bp):           5111092
Total number of identified SSRs:                 11
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	1	1
CGG	-	-	2		2
GCTG	-	1			1
ACCTGC				1	1
CACTGG	1				1
CTGGCG	1				1
GAAGTC	1				1
GACTCA	1				1
GCGCTG	1				1
GCTGGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
CCG/CGG	-	-	2		2
AGCC/CTGG	-	1			1
AAGTCG/ACTTCG	1				1
ACCTGC/AGGTGC				1	1
ACTCAG/AGTCTG	1				1
ACTGGC/AGTGCC	1				1
AGCGCC/CGCTGG	3				3
