Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_007623825.1/fasta/hub_GCF_007623825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              191
Total size of examined sequences (bp):           5459908
Total number of identified SSRs:                 13
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
4	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	2						2
GC	-	-	-	1						1
CCG	-	-	1							1
CGG	-	-	1							1
GCTG	-	1								1
CACTGG	1									1
CCGGTG	1									1
CGACTT	1									1
CTGCTA					1					1
CTGGCG	1									1
GCGCCA	1									1
GGTGCA									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	2						2
CG/CG	-	-	-	1						1
CCG/CGG	-	-	2							2
AGCC/CTGG	-	1								1
AAGTCG/ACTTCG	1									1
ACCGGC/CCGGTG	1									1
ACCTGC/AGGTGC									1	1
ACTGCT/AGCAGT					1					1
ACTGGC/AGTGCC	1									1
AGCGCC/CGCTGG	2									2
