Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCF_006970065.1/fasta/hub_GCF_006970065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1017184
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	1
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
TA	-	-	-	2				1		1					1	5
AAT	-	-			1											1
ATAAT	1															1
ATATT	1															1
CAAAA	1															1
CTTTT	1															1
TTATT	1															1
TTGTT	1															1
TTTTA	1															1
AGAAAA	1															1
ATCAAT	1															1
GAAAAA	1															1
TTTAAG	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT/AT	-	-	-	2				1		1					1	5
AAT/ATT	-	-			1											1
AAAAC/GTTTT	2															2
AAAAG/CTTTT	1															1
AAAAT/ATTTT	2															2
AATAT/ATATT	2															2
AAAAAG/CTTTTT	2															2
AAACTT/AAGTTT	1															1
AATATC/ATATTG	1															1
