Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCF_006517595.2/fasta/hub_GCF_006517595.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              106
Total size of examined sequences (bp):           4817102
Total number of identified SSRs:                 19
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	1											1
GC	-	-	-	2											2
ACG	-	-		1											1
CCG	-	-	1												1
CGC	-	-	1												1
CGG	-	-	1												1
CTG	-	-	1												1
GCC	-	-	2												2
GTG	-	-	1												1
CGCCA														1	1
GCGCG	1														1
GCGTG	1														1
GGCGC	1														1
TTTGA	1														1
CTGGCG	1														1
GAAGTC	1														1
GCGCCA	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	3											3
ACC/GGT	-	-	1												1
ACG/CGT	-	-		1											1
AGC/CTG	-	-	1												1
CCG/CGG	-	-	5												5
AAATC/ATTTG	1														1
ACGCC/CGTGG	1													1	2
CCGCG/CGCGG	2														2
AAGTCG/ACTTCG	1														1
AGCGCC/CGCTGG	2														2
