Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_006494695.1/fasta/hub_GCF_006494695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           805093
Total number of identified SSRs:                 15
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	1
4	2
5	1
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CT	-	-	-		1			1							2
TA	-	-	-		1	1		1						2	5
TC	-	-	-		1		1								2
TTA	-	-		1											1
AATG	-	1													1
ATAC	-	1													1
AATCT	1														1
ATTTTT	1														1
TTTGAA	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG/CT	-	-	-		2		1	1							4
AT/AT	-	-	-		1	1		1						2	5
AAT/ATT	-	-		1											1
AATG/ATTC	-	1													1
ACAT/ATGT	-	1													1
AATCT/AGATT	1														1
AAAAAT/ATTTTT	1														1
AAATTC/AATTTG	1														1
