Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCF_006439365.1/fasta/hub_GCF_006439365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           674949
Total number of identified SSRs:                 10
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	2
5	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT	-	-	-			1	1												2
TA	-	-	-	1															1
TC	-	-	-					1											1
ATT	-	-					1												1
GGT	-	-	1																1
AAAAC	1																		1
ATAAA	1																		1
TAAAA	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AG/CT	-	-	-					1											1
AT/AT	-	-	-	1		1	1												3
AAT/ATT	-	-					1												1
ACC/GGT	-	-	1																1
AAAAC/GTTTT	1																		1
AAAAT/ATTTT	2																		2
