Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCF_006228185.1/fasta/hub_GCF_006228185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           803230
Total number of identified SSRs:                 13
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	1
5	2
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT	-	-	-				1							1
CT	-	-	-					1	1					2
TA	-	-	-					3					1	4
TTA	-	-			1									1
AATCT	1													1
TGTTT	1													1
AGGAGT	1													1
ATTTTT	1													1
TTTGAA	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AG/CT	-	-	-					1	1					2
AT/AT	-	-	-				1	3					1	5
AAT/ATT	-	-			1									1
AAAAC/GTTTT	1													1
AATCT/AGATT	1													1
AAAAAT/ATTTTT	1													1
AAATTC/AATTTG	1													1
ACTCCT/AGGAGT	1													1
