Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCF_005577055.1/fasta/hub_GCF_005577055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           2800777
Total number of identified SSRs:                 7
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
AAAAT	1			1
CGTAT	1			1
TAAAA	1			1
GATGCG	1		1	2
GCGGAT	1			1
TCTTTA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAAAT/ATTTT	2			2
ACGAT/ATCGT	1			1
AAAGAT/ATCTTT	1			1
ATCCGC/ATGCGG	2		1	3
