Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-145/megassr/results/hub_GCF_004744955.1/fasta/hub_GCF_004744955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              251
Total size of examined sequences (bp):           4645907
Total number of identified SSRs:                 29
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	6
3	9
4	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		1
AT	-	-	-	1																	1
CG	-	-	-	4																	4
GC	-	-	-	1																	1
CAG	-	-	1																		1
CCA	-	-	1																		1
CCG	-	-	1																		1
CGC	-	-	1																		1
CGG	-	-	1																		1
CTG	-	-			1																1
GCC	-	-	1																		1
GCG	-	-	1																		1
GCT	-	-	1																		1
TGGC	-	1																			1
CGCGC	1																				1
GGCGC	1																				1
TGCGC	1																				1
CGACTT	1																				1
CGTGGT	1																				1
CTGGCG	1																				1
GCCAGC	1																				1
GCTCCG		1																			1
TACTCA	1																				1
TTGCTT	1																				1
TTTTTA	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	2
AT/AT	-	-	-	1																	1
CG/CG	-	-	-	5																	5
ACC/GGT	-	-	1																		1
AGC/CTG	-	-	2		1																3
CCG/CGG	-	-	5																		5
AGCC/CTGG	-	1																			1
AGCGC/CGCTG	1																				1
CCGCG/CGCGG	2																				2
AAAAAT/ATTTTT	1																				1
AAAAGC/CTTTTG	1																				1
AAGTCG/ACTTCG	1																				1
ACCACG/CGTGGT	1																				1
ACTCAT/AGTATG	1																				1
AGCCGG/CCGGCT		1																			1
AGCGCC/CGCTGG	2																				2
