Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-144/megassr/results/hub_GCF_004744915.1/fasta/hub_GCF_004744915.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              194
Total size of examined sequences (bp):           4634563
Total number of identified SSRs:                 28
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	4			4
GC	-	-	-	1			1
AGC	-	-	1				1
CAG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	2				2
GCA	-	-			1		1
GCG	-	-	2				2
GGT	-	-	1				1
GCCA	-	1					1
GCGCC	1						1
GCGCG	1						1
TGCGC	1						1
ATGGTC		1					1
CCGGAG		1					1
CGCCAG	1						1
CGTGGT	1						1
GAAGTC	1						1
GCCAGC	1						1
GTGGTC						1	1
TACTCA	1						1
TTGCTT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5			5
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	5				5
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAAAGC/CTTTTG	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT	1					1	2
ACCATG/ATGGTC		1					1
ACTCAT/AGTATG	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	2						2
