Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_004744885.1/fasta/hub_GCF_004744885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              142
Total size of examined sequences (bp):           4670726
Total number of identified SSRs:                 22
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	2
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	4						4
GC	-	-	-	1						1
CCG	-	-	3							3
CGC	-	-	1							1
CTG	-	-					1			1
GCC	-	-	1							1
GCT	-	-	1							1
TGGC	-	2								2
AAAAT	1									1
CGCGC	1									1
GCGCA	1									1
GGCGC	1									1
ATGGTC									1	1
CGACTT	1									1
CGCCAG	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5						5
AGC/CTG	-	-	1				1			2
CCG/CGG	-	-	5							5
AGCC/CTGG	-	2								2
AAAAT/ATTTT	1									1
AGCGC/CGCTG	1									1
CCGCG/CGCGG	2									2
AAGTCG/ACTTCG	1									1
ACCATG/ATGGTC									1	1
AGCGCC/CGCTGG	2									2
