Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_004744855.1/fasta/hub_GCF_004744855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              843
Total size of examined sequences (bp):           4785147
Total number of identified SSRs:                 31
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
2	5
3	5
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1					1												1											4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1			1		1	1	1																				1	7
CG	-	-	-	1		1																																									2
GC	-	-	-	2	1																																										3
CCG	-	-	1																																												1
CGG	-	-	2																																												2
CTG	-	-				1																																									1
GCT	-	-	1																																												1
TATT	-	1																																													1
TGGC	-	1																																													1
CGCGC	1																																														1
GCGCC	1																																														1
CAGCGC	1																																														1
CGACTT	1																																														1
CGCCAG	1																																														1
GCCAGC	1																																														1
GGCGGG	1																																														1
TGAGAT		1																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2			1		2	1	1										1										1	11
CG/CG	-	-	-	3	1	1																																									5
AGC/CTG	-	-	1			1																																									2
CCG/CGG	-	-	3																																												3
AAAT/ATTT	-	1																																													1
AGCC/CTGG	-	1																																													1
CCGCG/CGCGG	2																																														2
AAGTCG/ACTTCG	1																																														1
AATCTC/AGATTG		1																																													1
AGCGCC/CGCTGG	3																																														3
CCCCCG/CGGGGG	1																																														1
